Oxidation of a non-phenolic lignin model compound by two Irpex lacteus manganese peroxidases: evidence for implication of carboxylate and radicals.
Identifieur interne : 000534 ( Main/Exploration ); précédent : 000533; suivant : 000535Oxidation of a non-phenolic lignin model compound by two Irpex lacteus manganese peroxidases: evidence for implication of carboxylate and radicals.
Auteurs : Xing Qin [République populaire de Chine] ; Xianhua Sun [République populaire de Chine] ; Huoqing Huang [République populaire de Chine] ; Yingguo Bai [République populaire de Chine] ; Yuan Wang [République populaire de Chine] ; Huiying Luo [République populaire de Chine] ; Bin Yao [République populaire de Chine] ; Xiaoyu Zhang [République populaire de Chine] ; Xiaoyun Su [République populaire de Chine]Source :
- Biotechnology for biofuels [ 1754-6834 ] ; 2017.
Abstract
BACKGROUND
Manganese peroxidase is one of the Class II fungal peroxidases that are able to oxidize the low redox potential phenolic lignin compounds. For high redox potential non-phenolic lignin degradation, mediators such as GSH and unsaturated fatty acids are required in the reaction. However, it is not known whether carboxylic acids are a mediator for non-phenolic lignin degradation.
RESULTS
The white rot fungus
CONCLUSIONS
We provide evidence that a carboxylic acid may mediate oxidation of non-phenolic lignin through the action of radicals. MnPs, but not LiP, VP, or DyP, are predominant peroxidases secreted by some white rot fungi such as
DOI: 10.1186/s13068-017-0787-z
PubMed: 28439296
PubMed Central: PMC5399396
Affiliations:
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for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences, No. 12 South Zhongguancun Street, Beijing, 100081 People's Republic of China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences, No. 12 South Zhongguancun Street, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Luo, Huiying" sort="Luo, Huiying" uniqKey="Luo H" first="Huiying" last="Luo">Huiying Luo</name><affiliation wicri:level="3"><nlm:affiliation>Key Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences, No. 12 South Zhongguancun Street, Beijing, 100081 People's Republic of China.</nlm:affiliation><country 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Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Zhang, Xiaoyu" sort="Zhang, Xiaoyu" uniqKey="Zhang X" first="Xiaoyu" last="Zhang">Xiaoyu Zhang</name><affiliation wicri:level="3"><nlm:affiliation>College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, 430074 People's Republic of China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan</wicri:regionArea><placeName><settlement type="city">Wuhan</settlement><region type="région">Hubei</region></placeName></affiliation></author><author><name sortKey="Su, Xiaoyun" sort="Su, Xiaoyun" uniqKey="Su X" first="Xiaoyun" last="Su">Xiaoyun Su</name><affiliation wicri:level="3"><nlm:affiliation>Key Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences, No. 12 South Zhongguancun Street, Beijing, 100081 People's Republic of China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences, No. 12 South Zhongguancun Street, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2017">2017</date><idno type="RBID">pubmed:28439296</idno><idno type="pmid">28439296</idno><idno type="doi">10.1186/s13068-017-0787-z</idno><idno type="pmc">PMC5399396</idno><idno type="wicri:Area/Main/Corpus">000568</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000568</idno><idno type="wicri:Area/Main/Curation">000568</idno><idno type="wicri:explorRef" 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Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences, No. 12 South Zhongguancun Street, Beijing, 100081 People's Republic of China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences, No. 12 South Zhongguancun Street, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Sun, Xianhua" sort="Sun, Xianhua" uniqKey="Sun X" first="Xianhua" last="Sun">Xianhua Sun</name><affiliation wicri:level="3"><nlm:affiliation>Key Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences, No. 12 South Zhongguancun Street, Beijing, 100081 People's Republic of China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences, No. 12 South Zhongguancun Street, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Huang, Huoqing" sort="Huang, Huoqing" uniqKey="Huang H" first="Huoqing" last="Huang">Huoqing Huang</name><affiliation wicri:level="3"><nlm:affiliation>Key Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences, No. 12 South Zhongguancun Street, Beijing, 100081 People's Republic of China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences, No. 12 South Zhongguancun Street, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Bai, Yingguo" sort="Bai, Yingguo" uniqKey="Bai Y" first="Yingguo" last="Bai">Yingguo Bai</name><affiliation wicri:level="3"><nlm:affiliation>Key Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences, No. 12 South Zhongguancun Street, Beijing, 100081 People's Republic of China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences, No. 12 South Zhongguancun Street, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Wang, Yuan" sort="Wang, Yuan" uniqKey="Wang Y" first="Yuan" last="Wang">Yuan Wang</name><affiliation wicri:level="3"><nlm:affiliation>Key Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences, No. 12 South Zhongguancun Street, Beijing, 100081 People's Republic of China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences, No. 12 South Zhongguancun Street, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Luo, Huiying" sort="Luo, Huiying" uniqKey="Luo H" first="Huiying" last="Luo">Huiying Luo</name><affiliation wicri:level="3"><nlm:affiliation>Key Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences, No. 12 South Zhongguancun Street, Beijing, 100081 People's Republic of China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences, No. 12 South Zhongguancun Street, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Yao, Bin" sort="Yao, Bin" uniqKey="Yao B" first="Bin" last="Yao">Bin Yao</name><affiliation wicri:level="3"><nlm:affiliation>Key Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences, No. 12 South Zhongguancun Street, Beijing, 100081 People's Republic of China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences, No. 12 South Zhongguancun Street, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Zhang, Xiaoyu" sort="Zhang, Xiaoyu" uniqKey="Zhang X" first="Xiaoyu" last="Zhang">Xiaoyu Zhang</name><affiliation wicri:level="3"><nlm:affiliation>College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, 430074 People's Republic of China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan</wicri:regionArea><placeName><settlement type="city">Wuhan</settlement><region type="région">Hubei</region></placeName></affiliation></author><author><name sortKey="Su, Xiaoyun" sort="Su, Xiaoyun" uniqKey="Su X" first="Xiaoyun" last="Su">Xiaoyun Su</name><affiliation wicri:level="3"><nlm:affiliation>Key Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences, No. 12 South Zhongguancun Street, Beijing, 100081 People's Republic of China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences, No. 12 South Zhongguancun Street, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author></analytic><series><title level="j">Biotechnology for biofuels</title><idno type="ISSN">1754-6834</idno><imprint><date when="2017" type="published">2017</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><b>BACKGROUND</b></p><p>Manganese peroxidase is one of the Class II fungal peroxidases that are able to oxidize the low redox potential phenolic lignin compounds. For high redox potential non-phenolic lignin degradation, mediators such as GSH and unsaturated fatty acids are required in the reaction. However, it is not known whether carboxylic acids are a mediator for non-phenolic lignin degradation.</p></div><div type="abstract" xml:lang="en"><p><b>RESULTS</b></p><p>The white rot fungus </p></div><div type="abstract" xml:lang="en"><p><b>CONCLUSIONS</b></p><p>We provide evidence that a carboxylic acid may mediate oxidation of non-phenolic lignin through the action of radicals. MnPs, but not LiP, VP, or DyP, are predominant peroxidases secreted by some white rot fungi such as </p></div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">28439296</PMID><DateRevised><Year>2020</Year><Month>10</Month><Day>01</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Print">1754-6834</ISSN><JournalIssue CitedMedium="Print"><Volume>10</Volume><PubDate><Year>2017</Year></PubDate></JournalIssue><Title>Biotechnology for biofuels</Title><ISOAbbreviation>Biotechnol Biofuels</ISOAbbreviation></Journal><ArticleTitle>Oxidation of a non-phenolic lignin model compound by two <i>Irpex lacteus</i> manganese peroxidases: evidence for implication of carboxylate and radicals.</ArticleTitle><Pagination><MedlinePgn>103</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1186/s13068-017-0787-z</ELocationID><Abstract><AbstractText Label="BACKGROUND" NlmCategory="BACKGROUND">Manganese peroxidase is one of the Class II fungal peroxidases that are able to oxidize the low redox potential phenolic lignin compounds. For high redox potential non-phenolic lignin degradation, mediators such as GSH and unsaturated fatty acids are required in the reaction. However, it is not known whether carboxylic acids are a mediator for non-phenolic lignin degradation.</AbstractText><AbstractText Label="RESULTS" NlmCategory="RESULTS">The white rot fungus <i>Irpex lacteus</i> is one of the most potent fungi in degradation of lignocellulose and xenobiotics. Two manganese peroxidases (<i>Il</i>MnP1 and <i>Il</i>MnP2) from <i>I. lacteus</i> CD2 were over-expressed in <i>Escherichia coli</i> and successfully refolded from inclusion bodies. Both <i>Il</i>MnP1 and <i>Il</i>MnP2 oxidized the phenolic compounds efficiently. Surprisingly, they could degrade veratryl alcohol, a non-phenolic lignin compound, in a Mn<sup>2+</sup>-dependent fashion. Malonate or oxalate was found to be also essential in this degradation. The oxidation of non-phenolic lignin was further confirmed by analysis of the reaction products using LC-MS/MS. We proved that Mn<sup>2+</sup> and a certain carboxylate are indispensable in oxidation and that the radicals generated under this condition, specifically superoxide radical, are at least partially involved in lignin oxidative degradation. <i>Il</i>MnP1 and <i>Il</i>MnP2 can also efficiently decolorize dyes with different structures.</AbstractText><AbstractText Label="CONCLUSIONS" NlmCategory="CONCLUSIONS">We provide evidence that a carboxylic acid may mediate oxidation of non-phenolic lignin through the action of radicals. MnPs, but not LiP, VP, or DyP, are predominant peroxidases secreted by some white rot fungi such as <i>I. lacteus</i> and the selective lignocellulose degrader <i>Ceriporiopsis subvermispora</i>. Our finding will help understand how these fungi can utilize MnPs and an excreted organic acid, which is usually a normal metabolite, to efficiently degrade the non-phenolic lignin. The unique properties of <i>Il</i>MnP1 and <i>Il</i>MnP2 make them good candidates for exploring molecular mechanisms underlying non-phenolic lignin compounds oxidation by MnPs and for applications in lignocellulose degradation and environmental remediation.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Qin</LastName><ForeName>Xing</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, 430074 People's Republic of China.</Affiliation><Identifier Source="ISNI">0000 0004 0368 7223</Identifier><Identifier Source="GRID">grid.33199.31</Identifier></AffiliationInfo><AffiliationInfo><Affiliation>Key Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences, No. 12 South Zhongguancun Street, Beijing, 100081 People's Republic of China.</Affiliation><Identifier Source="ISNI">0000 0001 0526 1937</Identifier><Identifier Source="GRID">grid.410727.7</Identifier></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sun</LastName><ForeName>Xianhua</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>Key Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences, No. 12 South Zhongguancun Street, Beijing, 100081 People's Republic of China.</Affiliation><Identifier Source="ISNI">0000 0001 0526 1937</Identifier><Identifier Source="GRID">grid.410727.7</Identifier></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Huang</LastName><ForeName>Huoqing</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>Key Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences, No. 12 South Zhongguancun Street, Beijing, 100081 People's Republic of China.</Affiliation><Identifier Source="ISNI">0000 0001 0526 1937</Identifier><Identifier Source="GRID">grid.410727.7</Identifier></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bai</LastName><ForeName>Yingguo</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>Key Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences, No. 12 South Zhongguancun Street, Beijing, 100081 People's Republic of China.</Affiliation><Identifier Source="ISNI">0000 0001 0526 1937</Identifier><Identifier Source="GRID">grid.410727.7</Identifier></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wang</LastName><ForeName>Yuan</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>Key Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences, No. 12 South Zhongguancun Street, Beijing, 100081 People's Republic of China.</Affiliation><Identifier Source="ISNI">0000 0001 0526 1937</Identifier><Identifier Source="GRID">grid.410727.7</Identifier></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Luo</LastName><ForeName>Huiying</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>Key Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences, No. 12 South Zhongguancun Street, Beijing, 100081 People's Republic of China.</Affiliation><Identifier Source="ISNI">0000 0001 0526 1937</Identifier><Identifier Source="GRID">grid.410727.7</Identifier></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Yao</LastName><ForeName>Bin</ForeName><Initials>B</Initials><AffiliationInfo><Affiliation>Key Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences, No. 12 South Zhongguancun Street, Beijing, 100081 People's Republic of China.</Affiliation><Identifier Source="ISNI">0000 0001 0526 1937</Identifier><Identifier Source="GRID">grid.410727.7</Identifier></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhang</LastName><ForeName>Xiaoyu</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, 430074 People's Republic of China.</Affiliation><Identifier Source="ISNI">0000 0004 0368 7223</Identifier><Identifier Source="GRID">grid.33199.31</Identifier></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Su</LastName><ForeName>Xiaoyun</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>Key Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences, No. 12 South Zhongguancun Street, Beijing, 100081 People's Republic of China.</Affiliation><Identifier Source="ISNI">0000 0001 0526 1937</Identifier><Identifier Source="GRID">grid.410727.7</Identifier></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2017</Year><Month>04</Month><Day>21</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Biotechnol Biofuels</MedlineTA><NlmUniqueID>101316935</NlmUniqueID><ISSNLinking>1754-6834</ISSNLinking></MedlineJournalInfo><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Biofuel</Keyword><Keyword MajorTopicYN="N">Carboxylate</Keyword><Keyword MajorTopicYN="N">Dye decolorization</Keyword><Keyword MajorTopicYN="N">Irpex lacteus</Keyword><Keyword MajorTopicYN="N">Manganese peroxidase</Keyword><Keyword MajorTopicYN="N">Non-phenolic lignin</Keyword><Keyword MajorTopicYN="N">Veratryl alcohol</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate 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Chine</li></country><region><li>Hubei</li></region><settlement><li>Pékin</li><li>Wuhan</li></settlement></list><tree><country name="République populaire de Chine"><region name="Hubei"><name sortKey="Qin, Xing" sort="Qin, Xing" uniqKey="Qin X" first="Xing" last="Qin">Xing Qin</name></region><name sortKey="Bai, Yingguo" sort="Bai, Yingguo" uniqKey="Bai Y" first="Yingguo" last="Bai">Yingguo Bai</name><name sortKey="Huang, Huoqing" sort="Huang, Huoqing" uniqKey="Huang H" first="Huoqing" last="Huang">Huoqing Huang</name><name sortKey="Luo, Huiying" sort="Luo, Huiying" uniqKey="Luo H" first="Huiying" last="Luo">Huiying Luo</name><name sortKey="Qin, Xing" sort="Qin, Xing" uniqKey="Qin X" first="Xing" last="Qin">Xing Qin</name><name sortKey="Su, Xiaoyun" sort="Su, Xiaoyun" uniqKey="Su X" first="Xiaoyun" last="Su">Xiaoyun Su</name><name sortKey="Sun, Xianhua" sort="Sun, Xianhua" uniqKey="Sun X" first="Xianhua" last="Sun">Xianhua Sun</name><name sortKey="Wang, Yuan" sort="Wang, Yuan" uniqKey="Wang Y" first="Yuan" last="Wang">Yuan Wang</name><name sortKey="Yao, Bin" sort="Yao, Bin" uniqKey="Yao B" first="Bin" last="Yao">Bin Yao</name><name sortKey="Zhang, Xiaoyu" sort="Zhang, Xiaoyu" uniqKey="Zhang X" first="Xiaoyu" last="Zhang">Xiaoyu Zhang</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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